Table 1. Presence and absence of AMR genes in the Ligilactobacillus salivarius genomes from 4 AMR gene analysis programs

rgi staramr ABRicate AMR FinderPlus
Tetracycline-resistant ribosomal protection protein O O O O
Major facilitator superfamily (MFS) antibiotic efflux pump O O O O
Chloramphenicol acetyltransferase (CAT) O O O O
Lincosamide nucleotidyltransferase (LNU) O O O O
AAC(6')-APH(2") O O O O
Aminoglycoside nucleotidyltransferase (ANT(6)) O O O O
Erm 23S ribosomal RNA methyltransferase O O O O
ATP-binding cassette ribosomal protection protein (ABC-F) O O O O
Streptogramin vat acetyltransferase O O O O
Aminoglycoside nucleotidyltransferase (ANT(9)) O X O O
Non-erm 23S ribosomal RNA methyltransferase O X X X
Copper-translocating P-type ATPase (tcrB) X X X O