Table 3. Previous research regarding the genomic analysis with the perspective of the antibacterial potential

Category	Probiotics strain1)	Accession number	Major annotation tools	Reference
General annotation reports of antimicrobial proteins from genome sequences	Lactobacillus paracasei DTA93	VTYT00000000	RAST	Tarrah et al. (2020)
	Lactobacillus plantarum LZ206	CP015966	NCBI Prokaryotic Genome Annotation Pipeline	Li et al. (2016)
	Bacillus clausii ENTPro	CP012475	RAST	Khatri et al. (2019)
Functional annotation specialized for antimicrobial proteins	Lactobacillus acidophilus LA1	CP017062	BAGEL	Chung et al. (2018)
	Enterococcus durans OSY-EGY	GCA_004330425.1	antiSMASH, BAGEL	Hussein et al. (2020)
	Lactobacillus pentosus SLC13	CP021675	BACTIBASE, BAGEL, RAST	Huang et al. (2018)
	L. plantarum EM	CP037429.1	BAGEL, BLASTP, RAST	Kim et al. (2020)
	Pediococcus acidilactici HN9	CP061715	BAGEL, BLASTX	Surachat et al. (2020)
	P. acidilactici ATCC 8042	CP033438	RAST, Prokka, HyPe	Cho et al. (2019)
Assessment of the antibacterial effects followed by the general annotation reports of antimicrobial proteins	Lactobacillus taiwanensis CLG01	CP059276	NCBI non-redundant database	Li et al. (2021)
	L. paracasei ZFM54	CP032637.1	NCBI Prokaryotic Genome Annotation Pipeline	Qureshi et al. (2020)
Assessment of the antibacterial effects followed by the functional annotation specialized for antimicrobial proteins	Lactobacillus fermentum SK152	PRJNA318540	BAGEL, BLASTP	Yoo et al. (2017)
	L. pentosus DZ35	VUBB00000000	BAGEL, RAST	Yi et al. (2020a)
	Lactiplantibacillus plantarum R23	– 3)	BACTIBASE, BAGEL	Barbosa et al. (2021)
Genome and metabolites analysis for the purification of antimicrobial proteins	L. pentosus MS031	CP043671	BAGEL, RAST	Yi et al. (2020b)
Comparative genomics of antimicrobial proteins	P. acidilactici strains (n = 41)2)	– 2), 3)	BAGEL, BLASTP	Li et al. (2021)
Comparative genomics and characterization of antimicrobial potential based on phenotype-genotype relationship	Bifidobacterium sp. (n = 12), Lactobacillus sp. (n = 46)2)	– 2), 3)	BACTIBASE, BAGEL	Darvishi et al. (2021)

Strain name (including the nomenclature of genus and species of that strain) used in the cited article was indicated.
In the case of comparative genomics, the multiple strains were used for the analysis and the name of the strains with accession numbers were omitted in this table. The contents in the parenthesis indicate the number of strains used for the comparison.
Accession number was not indicated in the cited article.